Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015940786.1_cds_XP_016484907.1_75878
CDS Infomation

[gene=LOC107805391] [db_xref=GeneID:107805391] [protein=vacuolar-sorting receptor 6-like] [protein_id=XP_016484907.1] [location=join(3556..3883,4737..5429,5525..5613,5750..5819,5972..6055,6154..6230,6358..6439,7211..7293,7381..7444,7554..7682,7839..7942,8044..8163)] [gbkey=CDS]
Sequence

ATGTTCGTACCTTTTCACCCTGCAAACATGGCTGCTCTGTTTTTCCTAGTAGTTGTTTTA
CCTTTTTTCTTGATAATATCGAATGTTGTTGTAATTGAGGCAAGATTTATAGTTGAGAAA
AACAGTATTAGTGTTTTGTCTCCTTATTCAATGCACTCAAAACATGATGCTTCTATTGGT
AATTTTGGTGTGCCTGATTATGGTGGTTCTTTGGTTGGAACTGTTGTTTATCCTAAGAAA
GATTCCAATGGTTGCACTGTTTTTGATGGTGATAAGCCCTTCAAATCCCAGGCTCATCGT
CCTAATTTTCTTCTTCTTGATCGTGGAGACTGCTATTTTGCTTTGAAGGTTTGGAATGGG
CAACAAGCTGGAGCAGCTGCAGTTCTAGTGGCTGATAGCATAGATGAGCCTCTTATAACT
ATGGATTCTCCTGAAGAAAGCACAGATGCTGATGGATACATTGACAAGATTGGAATCCCT
TCAGCCTTAATTGGAAAGTCCTTTGGCGACACATTGAAAGAAGCTCTGAAGAAGGGAGAG
GAAGTTGTGATCAAAATGGATTGGACAGAGTCAATGCCGCACCCTGATCAACGAGTTGAG
TACGAGCTGTGGACTAATAGCAATGATGAGTGCGGGGTTCGTTGTGATGAGCAGATGAAT
TTCATTAAGAGCTTCAAGGGACACGCTCAGATACTTGAAAAGGGCGGTTATACTATGTTC
ACACCTCACTATATTACTTGGTACTGTCCTGAAGCATTCATTCTTAGCAGTCAGTGCAAA
TCTCAGTGCATAAATCACGGGAGATATTGCGCTCCTGATCCAGAGCAGGACTTTGGGGAG
GGGTACCAAGGGAAGGATATCGTCTTTGAGAACTTGAGGCAGCTCTGTGTGCACAGAGTG
GCAAACAAGAGTAATCGTTCTTGGGTTTGGTGGGATTATGTGACAGATTTCCATATCAGA
TGTTCAATGAAGCAAAAGAGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCGCTT
GATCTACCTGTTGAGAAGATAAAGAAATGCATGGGTGATCCAGAGGCTAATGTAGAAAAT
AAAGTGCTAAAGACTGAGCAGGATCTCCAGGTCGGCCGAGGACCTCGTGGTGATGTGACA
ATCTTACCAACAATGGTCGTCAATGATGTTCAATATCGAGGAAAATTGGAGAGGGCTGCT
GTTTTGAAGGCCATATGTGCTGGATTTAAGGAAACAACTGAGCCTTCGATATGTTTAAGT
GGAGATCTTGAAACAAATGAGTGCCTTGAAAGGAATGGTGGCTGTTGGCGGGATCCAAAA
TCTAACGTAACTGCCTGCAAGGACACTTTTAGAGGAAGAGTTTGTGAGTGCCCTTTGGTG
AACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAGCCGTTGGACCCGGAAGG
TGTACAGTAAATAATGGAGGATGCTGGTTAGAAACCAGAAATGGAGAAACATTCTCAGCA
TGCTCAGAGGCAGATCCATCAGGCTGTAAGTGTCCATTTGGTTTTCAAGGGGATGGCCAT
AAATGTGAAGATGTAAATGAATGCAAGGACGGACTTGCTTGTCAGTGTGATGGCTGCAGC
TGTAAGAACACATGGGGCGGATACGATTGCAAGTGTAAAGGAAATCAATTGTACATAATG
GAGCATGATACATGTATAGAAAGACACTCATCAAAGGTTGGACGGGTCCTTATATTCTCT
ATCCTAGCCATTGCAGTGGGTACTGGTGTAGCTGGTTACATCTTTTACAAATATAGACTT
CGGTCCTACATGGACTCGGAGATTATGGCTATTATGTCACAGTACATGCCTCTTGATAAC
AACCATCAGAATCAGGTTGTTGTCCATCACGAAACTGAACCTCTACGACAGAGCTCAGTA
TGA

Peptide Sequence

PEP ID

XP_016484907.1
PEP Infomation

PREDICTED: vacuolar-sorting receptor 6-like [Nicotiana tabacum]
Sequence

MFVPFHPANMAALFFLVVVLPFFLIISNVVVIEARFIVEKNSISVLSPYSMHSKHDASIG
NFGVPDYGGSLVGTVVYPKKDSNGCTVFDGDKPFKSQAHRPNFLLLDRGDCYFALKVWNG
QQAGAAAVLVADSIDEPLITMDSPEESTDADGYIDKIGIPSALIGKSFGDTLKEALKKGE
EVVIKMDWTESMPHPDQRVEYELWTNSNDECGVRCDEQMNFIKSFKGHAQILEKGGYTMF
TPHYITWYCPEAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDIVFENLRQLCVHRV
ANKSNRSWVWWDYVTDFHIRCSMKQKRYSKECAEEVMKSLDLPVEKIKKCMGDPEANVEN
KVLKTEQDLQVGRGPRGDVTILPTMVVNDVQYRGKLERAAVLKAICAGFKETTEPSICLS
GDLETNECLERNGGCWRDPKSNVTACKDTFRGRVCECPLVNGVQYKGDGYTSCEAVGPGR
CTVNNGGCWLETRNGETFSACSEADPSGCKCPFGFQGDGHKCEDVNECKDGLACQCDGCS
CKNTWGGYDCKCKGNQLYIMEHDTCIERHSSKVGRVLIFSILAIAVGTGVAGYIFYKYRL
RSYMDSEIMAIMSQYMPLDNNHQNQVVVHHETEPLRQSSV

Transcript Sequence

Gene sequence data has not been registered.